======================= Mission Statement ======================= Free energy will be minimized for defect "perfect_crystal" using WOON pair potential with RCUT = 2.500000 = 8.512500 A under "constant_S" mode. | 0.00000 0.00000 0.00000 | sout[MPa] = | 0.00000 0.00000 0.00000 | | 0.00000 0.00000 0.00000 | The defect will be benchmarked against perfect crystal (BENCHMARK_NP = 256) at P = 0: benchmarked lattice constant = 1.553508 = 5.289694 A, benchmarked volume per particle = 0.937304 = 0.023743 A^3, benchmarked energy per particle = -7.476478 = -0.077184 eV, benchmark done. Allocating memories for maximum of 864 particles. The initial configuration is created from scratch. | 35.68963 0.00000 0.00000 | Initial H[A] = | 0.00000 35.68963 0.00000 | | 0.00000 0.00000 35.68963 | Total supercell volume = 1151.528761 = 45459.655300 A^3. Defect "perfect_crystal" generated successfully on the computer. Particles within distance 5.000 A of original particle 0 would be recorded in "perfect_crystal.u" before minimization and "perfect_crystal.r" after minimization, in .pdb format that can be viewed by Rasmol (freeware). ******************** Before Minimization ******************** The total energy = -47.041396 eV, energy/atom = -0.054446 eV, so the defect formation energy (unrelaxed) = -47.041396 - 864 x -0.077184 = 19.645905 eV. (free energy reference is perfect crystal at zero stress) The total volume = 45459.655 A^3, volume/atom = 52.615342 A^3, so the excess volume (unrelaxed) = 45459.655300 - 864 x 37.002545 = 13489.456524 A^3. (volume reference is perfect crystal at zero stress) | -269.82173 -0.00000 -0.00000 | Initial stress[MPa] = | -0.00000 -269.82173 -0.00000 | | -0.00000 -0.00000 -269.82173 | -------- shadow positioning around tag particle 0 -------- neigh index D[A] Dx[A] Dy[A] Dz[A] ---------------------------------------------------------- 0 0 0.00000 0.00000 0.00000 0.00000 1 142 4.20606 0.00000 -2.97414 -2.97414 2 743 4.20606 -2.97414 0.00000 -2.97414 3 841 4.20606 -2.97414 -2.97414 0.00000 4 22 4.20606 0.00000 2.97414 -2.97414 5 23 4.20606 2.97414 0.00000 -2.97414 6 121 4.20606 2.97414 -2.97414 0.00000 7 122 4.20606 0.00000 -2.97414 2.97414 8 721 4.20606 -2.97414 2.97414 0.00000 9 723 4.20606 -2.97414 0.00000 2.97414 10 1 4.20606 2.97414 2.97414 0.00000 11 2 4.20606 0.00000 2.97414 2.97414 12 3 4.20606 2.97414 0.00000 2.97414 ---------------------------------------------------------- (above is saved on "perfect_crystal.u" in .pdb format) ************************************************************* Random number seed = 921993867, using which we give each particle a random kick of (-0.029741, 0.029741) A in three directions. Minimization tolerance = 0.0000000010. The relaxed configuration would be saved on "perfect_crystal". The screen output would be saved on "perfect_crystal.out". ==================== End of Mission Statement ===================== Minimization starts... value = -47.036842 force evaluation... stress discrepancy = 466.719292 MPa f = -7405.858138 -7405.960044 -7405.906764 0.097044 0.862506 0.452109 value = -47.036842 value = 0.000000 value = 0.000000 value = -47.036842 value = 0.000000 value = 0.000000 value = 0.000000 value = 0.000000 value = 0.000000 value = 0.000000 value = 0.000000 value = 0.000000 value = 0.000000 value = 0.000000 value = 321445.305915 value = 0.000000 value = 0.000000 value = 0.000000 value = -5.485922 value = -29.104940 value = -33.294022 value = -57.462377 value = -66.028865 value = -65.011248 value = -66.541987 value = -66.589261 value = -66.594361 value = -66.594797 value = -66.594797 value = -66.594793 value = -66.594797 force evaluation... stress discrepancy = 0.144817 MPa f = -1.169599 -2.075112 -0.764228 0.282203 1.578177 0.780520 value = -66.594797 value = 0.000000 value = 0.000000 value = -66.594797 value = 0.000000 value = 0.000000 value = 0.000000 value = 0.000000 value = 32740.370480 value = -66.594798 value = 0.000000 value = 36597.785076 value = -66.594798 value = -66.673562 value = 271871.160321 value = -66.674333 value = -66.674335 value = -66.674335 value = -66.674335 value = -66.674335 value = -66.674335 force evaluation... stress discrepancy = 12.127863 MPa f = 134.792140 135.710432 134.364142 -1.850592 -14.109981 -6.662910 value = -66.674335 value = 0.000000 value = 0.000000 value = -66.674335 value = 0.000000 value = 0.000000 value = 0.000000 value = 0.000000 value = 0.000000 value = 0.000000 value = 0.000000 value = 28873.579813 value = -6.144035 value = 915495.292571 value = -39.384817 value = 481.929085 value = -58.658406 value = -41.947374 value = -65.905239 value = -66.568401 value = -66.677537 value = -66.678289 value = -66.678289 value = -66.678289 value = -66.678289 value = -66.678289 value = -66.678289 force evaluation... stress discrepancy = 10.417265 MPa f = -116.410842 -115.701772 -116.677154 1.687651 14.209788 6.575168 value = -66.678289 value = 0.000000 value = 0.000000 value = -66.678289 value = 0.000000 value = 0.000000 value = 0.000000 value = 0.000000 value = 43588.124560 value = -66.678289 value = 0.000000 value = 218314.725929 value = -66.678289 value = -66.683585 value = 5988.869178 value = -66.685333 value = -66.685333 value = -66.685333 value = -66.685333 value = -66.685333 value = -66.685333 force evaluation... stress discrepancy = 0.585849 MPa f = 5.016811 4.708644 5.304064 -0.785548 -9.341248 -4.195711 value = -66.685333 value = 0.000000 value = 0.000000 value = -66.685333 value = 0.000000 value = 0.000000 value = -0.009070 value = 5.409810 value = 44957.672828 value = 139652.528243 value = 51347.800602 value = 34439.584326 value = 371.298404 value = 93.517489 value = -50.625034 value = -56.892843 value = -66.654982 value = -66.686542 value = -66.686591 value = -66.686591 value = -66.686591 value = -66.686591 value = -66.686591 force evaluation... stress discrepancy = 2.952454 MPa f = -11.768429 -11.914574 -11.854243 5.708811 68.504991 30.789236 value = -66.686591 value = 0.000000 value = 0.000000 value = -66.686591 value = 0.000000 value = 0.000000 value = 0.000000 value = 0.000000 value = 103542.891981 value = -66.686591 value = 0.000000 value = -47.015267 value = -66.686755 value = -66.686789 value = -66.686789 value = -66.686789 value = -66.686789 value = -66.686789 force evaluation... stress discrepancy = 0.792145 MPa f = 1.758116 1.770257 1.608674 -1.603401 -19.321280 -8.679579 value = -66.686789 value = 0.000000 value = 0.000000 value = -66.686789 value = 0.000000 value = -0.010268 value = 153455.345068 value = -66.686789 value = 18865.974542 value = 46.133389 value = -58.950708 value = -66.687092 value = -66.687102 value = -66.687102 value = -66.687102 value = -66.687102 value = -66.687102 force evaluation... stress discrepancy = 0.885301 MPa f = 9.489485 9.599992 9.496818 0.445914 5.806211 2.600372 value = -66.687102 value = 0.000000 value = 0.000000 value = -66.687102 value = 0.000000 value = 0.000000 value = -0.021312 value = 0.000000 value = -6.170975 value = 2170.893950 value = -27.630790 value = -52.704213 value = -63.407942 value = -62.777809 value = -66.598226 value = -66.683250 value = -66.687136 value = -66.687139 value = -66.687139 value = -66.687139 value = -66.687139 value = -66.687139 force evaluation... stress discrepancy = 1.187418 MPa f = -12.964639 -12.899260 -12.943973 -0.480580 -6.430743 -2.874749 value = -66.687139 value = 0.000000 value = 0.000000 value = -66.687139 value = 0.000000 value = -0.038314 value = 493062.656717 value = -66.687139 value = 20.543720 value = -60.562826 value = -66.687213 value = -66.687218 value = -66.687218 value = -66.687218 value = -66.687218 value = -66.687218 force evaluation... stress discrepancy = 0.081930 MPa f = 0.930855 0.835545 0.959660 -0.012489 0.196045 0.076028 value = -66.687218 value = 5184419.036027 value = 14271.120474 value = -66.687218 value = 42666.327020 value = 138276.843988 value = 54834.063361 value = 51550.893056 value = 3610.610531 value = 309.868662 value = -57.177839 value = -65.358750 value = -66.664857 value = -66.687217 value = -66.687256 value = -34.824693 value = -66.687256 value = -66.687256 value = -66.687256 value = -66.687256 force evaluation... stress discrepancy = 0.275249 MPa f = -3.041431 -2.993821 -3.075359 0.362145 0.921598 0.539679 value = -66.687256 value = 0.000000 value = 0.000000 value = -66.687256 value = 0.000000 value = 2.025286 value = 3873331.418009 value = 462.631729 value = -32.633138 value = 742.677052 value = -55.848507 value = -37.774598 value = -65.316620 value = -66.150904 value = -66.681757 value = -66.687245 value = -66.687263 value = -66.687263 value = -66.687263 value = -66.687263 value = -66.687263 value = -66.687263 force evaluation... stress discrepancy = 0.595956 MPa f = 6.546058 6.586364 6.523795 -0.880947 -2.281756 -1.328808 value = -66.687263 value = 0.000000 value = 0.000000 value = -66.687263 value = -0.012732 value = 3394.961535 value = 28673.416792 value = 342214.022043 value = 26061.068452 value = 7156.097463 value = 178.840544 value = 11.512812 value = -52.268073 value = -60.966288 value = -66.535310 value = -66.684793 value = -66.687277 value = -66.687278 value = -66.687278 value = -66.687278 value = -66.687278 value = -66.687278 force evaluation... stress discrepancy = 0.055277 MPa f = -0.321337 -0.331870 -0.298209 0.398025 1.068558 0.615024 value = -66.687278 value = 246.504126 value = 0.000000 value = -66.687278 value = 74060.454498 value = 194032.937130 value = 11128.742023 value = -44.943842 value = -62.681845 value = -66.591783 value = -66.687118 value = -66.687285 value = -66.687285 value = -66.687285 value = -66.687285 value = -66.687285 value = -66.687285 value = -66.687285 force evaluation... stress discrepancy = 0.360586 MPa f = -0.596416 -0.612881 -0.595030 -2.982316 -8.044695 -4.622926 value = -66.687285 value = 0.000000 value = 0.000000 value = -66.687285 value = 0.000000 value = 0.000000 value = 20.289613 value = 768.209814 value = 6599.572427 value = 14183.553715 value = 9.614984 value = -3.380040 value = -59.713997 value = -66.402917 value = -66.687145 value = -66.687288 value = -66.687288 value = -66.687288 value = -66.687288 value = -66.687288 force evaluation... stress discrepancy = 0.064507 MPa f = 0.230332 0.217868 0.220844 0.512428 1.384309 0.794804 value = -66.687288 value = 177075.695335 value = 47296.089130 value = -66.687288 value = 71330.726587 value = 50636.042412 value = -41.971256 value = -61.875996 value = -66.563544 value = -66.687253 value = -66.687293 value = -66.687293 value = -66.687293 value = -66.687293 value = -66.687293 force evaluation... stress discrepancy = 0.085902 MPa f = -0.956397 -0.937019 -0.961310 -0.081005 -0.238053 -0.130266 value = -66.687293 value = 8873.654070 value = 0.000000 value = -66.687293 value = 404438.211923 value = 450.058038 value = -27.549830 value = -53.274787 value = 10500.902687 value = 55.046062 value = -58.321178 value = -65.719302 value = -66.653813 value = -66.686994 value = -66.687294 value = -66.687294 value = -66.687294 value = -66.687294 value = -66.687294 value = -66.687294 force evaluation... stress discrepancy = 0.283900 MPa f = 3.154319 3.163645 3.155187 0.170596 0.531581 0.281604 value = -66.687294 value = -0.000047 value = 0.000000 value = -66.687294 value = 23287.889558 value = 2897864.629798 value = 38942.490476 value = 22008.193286 value = 680.651532 value = -32.747258 value = -60.535045 value = -66.680537 value = -66.687173 value = -66.687297 value = -66.687297 value = -66.687297 value = -66.687297 value = -66.687297 value = -66.687297 value = -66.687297 value = -66.687297 value = -66.687297 force evaluation... stress discrepancy = 0.020790 MPa f = -0.229641 -0.247809 -0.217367 0.005760 -0.011898 0.002122 value = -66.687297 value = 47503.845140 value = 120437.439550 value = -66.687297 value = 16613.807965 value = 652.297061 value = -40.975789 value = -62.808272 value = -66.598985 value = -66.687297 value = -66.687299 value = -66.687299 value = -66.687299 value = -66.687299 value = -66.687299 force evaluation... stress discrepancy = 0.046178 MPa f = 0.494966 0.505476 0.483231 -0.184479 -0.212283 -0.214892 value = -66.687299 value = 2659.676878 value = 18814.143185 value = -66.687299 value = 1629.062212 value = 10407.247939 value = -32.000001 value = -54.727466 value = 41.879695 value = 24.729437 value = -60.181676 value = -65.988450 value = -66.666205 value = -66.687162 value = -66.687299 value = -66.687299 value = -66.687299 value = -66.687299 value = -66.687299 value = -66.687299 value = -66.687299 value = -66.687299 force evaluation... stress discrepancy = 0.151268 MPa f = -1.603352 -1.595565 -1.610100 0.673894 0.779911 0.786011 value = -66.687299 value = 44616.901305 value = 0.000000 value = -66.687299 value = 225644.942080 value = 22009.225331 value = 28.032925 value = -52.318436 value = -65.524222 value = -66.658302 value = -66.687149 value = -66.687300 value = -66.687300 value = -66.687300 value = -66.687300 value = -66.687300 value = -66.687300 value = -66.687300 value = -66.687300 value = -66.687300 value = -66.687300 value = -66.687300 value = -66.687300 value = -66.687300 force evaluation... stress discrepancy = 0.014744 MPa f = 0.055339 0.054244 0.060334 -0.195948 -0.228682 -0.229003 value = -66.687300 value = 3926.392301 value = 11078.134237 value = -66.687300 value = 1192.628738 value = 0.394340 value = -59.245983 value = -66.370800 value = -66.687219 value = -66.687300 value = -66.687300 value = -66.687300 value = -66.687300 value = -66.687300 value = -66.687300 value = -66.687300 value = -66.687300 force evaluation... stress discrepancy = 0.103266 MPa f = 0.545958 0.541444 0.548609 1.286349 1.505251 1.504321 value = -66.687300 value = 0.000000 value = 0.000000 value = -66.687300 value = 8508.585320 value = 2516.958346 value = -60.041944 value = -66.344190 value = -66.682112 value = -66.687296 value = -66.687300 value = -66.687300 value = -66.687300 value = -66.687300 value = -66.687300 value = -66.687300 force evaluation... stress discrepancy = 0.013300 MPa f = -0.086694 -0.091754 -0.086429 -0.151002 -0.177068 -0.176674 value = -66.687300 value = 3852.128991 value = 46865.424738 value = -66.687300 value = 224.787665 value = -31.658097 value = -64.573271 value = -66.626072 value = -66.687298 value = -66.687301 value = -66.687301 value = -66.687301 value = -66.687301 value = -66.687301 value = -66.687301 value = -66.687301 force evaluation... stress discrepancy = 0.016292 MPa f = 0.180170 0.185863 0.177117 0.019111 0.025974 0.023221 value = -66.687301 value = 4622.063033 value = 850.105639 value = -66.687301 value = -38.864349 value = 11.388806 value = -60.593131 value = -60.699629 value = -66.453887 value = -66.681728 value = -66.687291 value = -66.687301 value = -66.687301 value = -66.687301 value = -66.687301 value = -66.687301 value = -66.687301 force evaluation... stress discrepancy = 0.067909 MPa f = -0.757156 -0.754893 -0.757712 -0.048228 -0.073252 -0.060459 value = -66.687301 value = 22059.179633 value = 13750290.434164 value = -66.687301 value = 50367.365513 value = 540.429554 value = -44.280924 value = -61.313412 value = -66.437483 value = -66.678633 value = -66.687290 value = -66.687301 value = -66.687301 value = -66.687301 value = -66.687301 value = -66.687301 value = -66.687301 value = -66.687301 value = -66.687301 value = -66.687301 force evaluation... stress discrepancy = 0.006170 MPa f = 0.068815 0.065331 0.071852 0.003128 0.008789 0.004893 value = -66.687301 value = 57.132012 value = 1802.305114 value = -66.687301 value = -43.016713 value = -58.345167 value = -66.683094 value = -66.687267 value = -66.687301 value = -66.687301 value = -66.687301 value = -66.687301 value = -66.687301 value = -66.687301 value = -66.687301 value = -66.687301 value = -66.687301 force evaluation... stress discrepancy = 0.006858 MPa f = -0.074698 -0.074575 -0.075955 0.005324 -0.035774 -0.003881 value = -66.687301 value = -44.555072 value = 1349.696846 value = -66.687301 value = -30.092281 value = -62.124113 value = -66.228725 value = -66.662432 value = -66.687221 value = -66.687301 value = -66.687301 value = -66.687301 value = -66.687301 value = -66.687301 value = -66.687301 value = -66.687301 value = -66.687301 value = -66.687301 value = -66.687301 value = -66.687301 value = -66.687301 value = -66.687301 Minimization converged after 27 iterations. ******************** After Minimization ******************** The total energy = -66.687301 eV, energy/atom = -0.077184 eV, so the defect formation energy (relaxed) = -66.687301 - 864 x -0.077184 = 0.000000 eV. (free energy reference is perfect crystal at zero stress) and it has increased by -19.645905 eV during the relaxation. | 31.73811 0.00000 -0.00003 | Final H[A] = | 0.00000 31.73811 -0.00000 | | -0.00003 -0.00000 31.73811 | The total volume = 31970.046 A^3, volume/atom = 37.002368 A^3, so the excess volume (relaxed) = 31970.045910 - 864 x 37.002545 = -0.152866 A^3. (volume reference is perfect crystal at zero stress) and it has increased by -13489.609391 A^3 during the run. | 0.01454 -0.00060 0.00389 | Final stress[MPa] = | -0.00060 0.01457 0.00040 | | 0.00389 0.00040 0.01450 | -------- shadow positioning around tag particle 0 -------- neigh index D[A] Dx[A] Dy[A] Dz[A] ---------------------------------------------------------- 0 0 0.00003 -0.00001 0.00001 0.00002 1 142 3.74033 -0.00002 -2.64482 -2.64481 2 23 3.74036 2.64487 0.00003 -2.64480 3 2 3.74036 -0.00003 2.64484 2.64483 4 22 3.74036 0.00002 2.64486 -2.64481 5 122 3.74037 -0.00002 -2.64483 2.64485 6 121 3.74037 2.64486 -2.64482 0.00002 7 743 3.74038 -2.64485 0.00003 -2.64484 8 841 3.74039 -2.64489 -2.64482 -0.00000 9 3 3.74039 2.64485 0.00001 2.64486 10 1 3.74039 2.64486 2.64485 0.00003 11 723 3.74040 -2.64491 -0.00001 2.64482 12 721 3.74041 -2.64488 2.64485 -0.00001 ---------------------------------------------------------- (above is saved on "perfect_crystal.r" in .pdb format) ************************************************************ Saving relaxed configuration on file "perfect_crystal". screen output saved on file "perfect_crystal.out".